From the Holy Father's Wednesday general audience of January 27th, he speaks about the life and vocation of St. Francis of Assisi and the crisis of the Church in Francis' own times, as well as his approach to helping heal that crisis. [NLM emphases]
"Three times the crucified Christ came to life and said to him: "Go, Francis, and repair my Church in ruins." This simple event of the Word of the Lord heard in the church of San Damiano hides a profound symbolism. Immediately, St. Francis is called to repair this little church, but the ruinous state of this building is a symbol of the tragic and disturbing situation of the Church itself at that time, with a superficial faith that does not form and transform life, with a clergy lacking in zeal, with the cooling off of love; an interior destruction of the Church that also implied a decomposition of unity, with the birth of heretical movements.
"This event, which probably occurred in 1205, makes one think of another similar event that happened in 1207: the dream of Pope Innocent III. He saw in a dream that the Basilica of St. John Lateran, the Mother Church of all churches, was collapsing and a small and insignificant religious supported the church with his shoulders so that it would not collapse. It is interesting to note, on one hand, that it is not the Pope who helps so that the church will not collapse, but a small and insignificant religious, whom the Pope recognizes in Francis who visited him. Innocent III was a powerful Pope, of great theological learning, as well as of great political power, yet it was not for him to renew the Church, but for the small and insignificant religious: It is St. Francis, called by God.
"On the other hand, however, it is important to note that St. Francis does not renew the Church without or against the Pope, but only in communion with him. The two realities go together: the Successor of Peter, the bishops, the Church founded on the succession of the Apostles and the new charism that the Holy Spirit created at this moment to renew the Church. True renewal grows together."
-- Benedict XVI, Wednesday General Audience, January 27, 2010 (Source: Zenit.org)